Rules of Protein-DNA Recognition: Computational and Experimental Advances
Videos from CMO Workshop
Gary Stormo, Washington University in St. Louis
Monday Jun 4, 2018 09:14 - 10:16
The Coming of the Golden Age
Richard Mann, Columbia University
Monday Jun 4, 2018 10:50 - 11:21
Protein DNA recognition by Hox-cofactors complexes
Juan Fuxman Bass, Boston University
Monday Jun 4, 2018 11:25 - 11:51
Gene regulatory network rewiring by disease variants and transcription factor isoforms
Eric Ortlund, Emory University
Monday Jun 4, 2018 15:02 - 15:29
Distal substitutions alter conformational space to create new functions among paralogous transcription factors
Trevor Siggers, Boston University
Monday Jun 4, 2018 15:37 - 16:00
Biophysical principles of PU.1 binding revealed by nextPBM
Alejandra Eugenia Medina Rivera, Universidad Nacional Autonoma de Mexico
Monday Jun 4, 2018 16:32 - 16:56
Inter-tissue, interspecies comparisons of the transcription factor JUN in endothelial cells identify regulatory mechanisms associated with vascular disease
Yael Mandel-Gutfreund, Technion-Israel Institute of Technology
Monday Jun 4, 2018 17:01 - 17:26
Revealing the role of dual DNA and RNA binding proteins in Human embryonic stem cells
Marcus Noyes, New York University, Langone Medical Center
Monday Jun 4, 2018 17:34 - 17:58
Direct and indirect influences that adjacent C2H2 zinc fingers have on DNA-binding strategies
Julia Rogers, Brigham and Women's Hospital and Harvard Medical School
Tuesday Jun 5, 2018 09:10 - 09:25
Novel mechanism of bispecificity in forkhead transcription factors
Alexandre Morozov, Rutgers University
Tuesday Jun 5, 2018 09:32 - 10:00
Higher-order chromatin structure: The role of Mediator
Chaitanya Rastogi, Columbia University
Tuesday Jun 5, 2018 10:07 - 10:19
Accurate and sensitive quantification of protein-DNA binding affinity
Barak Cohen, Washington University
Tuesday Jun 5, 2018 11:36 - 11:57
Integration of local and regional cis-regulatory information
Joe Thornton, University of Chicago
Tuesday Jun 5, 2018 12:09 - 12:43
Mechanisms for the evolution of steroid receptor/DNA specificity using ancestral reconstruction and deep mutational scanning
Julio Collado-Vides, UNAM
Tuesday Jun 5, 2018 15:05 - 15:33
A global analysis of the distance to transcription initiation of binding sites in bacterial promoters
Polly Fordyce, Stanford University
Tuesday Jun 5, 2018 15:39 - 16:11
Probing effects of flanking sequence via high-resolution measurements of millions of TF-DNA binding energies
Matthew Weirauch, Cincinnati Children's Hospital
Tuesday Jun 5, 2018 16:37 - 17:04
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity
Manuel Llinas, Penn State
Tuesday Jun 5, 2018 17:12 - 17:41
Transcription factor crosstalk during developmental differentiation
Kai Chen, Princeton University
Tuesday Jun 5, 2018 17:47 - 18:03
Transcriptional atlas of a proto-vertebrate
Jussi Taipale, University of Cambridge
Wednesday Jun 6, 2018 09:02 - 09:29
Genome-wide analysis of protein-DNA interactions
Bart Deplancke, EPFL
Wednesday Jun 6, 2018 09:42 - 10:07
SMILE-seq-based analysis of DNA binding specificities of human KRAB zinc-finger proteins
April Mueller, NYU
Wednesday Jun 6, 2018 10:19 - 10:32
A protein-protein interaction of adjacent C2H2 zinc fingers controls binding geometry and the residues able to specify DNA targets
Harmen J. Bussemaker, Columbia University
Thursday Jun 7, 2018 09:05 - 09:33
A unified approach for quantifying and interpreting DNA shape readout by transcription factors
Miles Pufall, University of Iowa
Thursday Jun 7, 2018 09:41 - 10:05
The effects of sequence and mismatches on Cas9 activity
Yaakov Levy, Weizmann
Thursday Jun 7, 2018 10:09 - 10:41
Molecular principles for optimizing protein-DNA interactions
Remo Rohs, University of Southern California
Thursday Jun 7, 2018 11:12 - 11:41
A tale of DNA shape analysis: a user manual and next steps
Tom Tullius, Boston University
Thursday Jun 7, 2018 11:49 - 12:16
DNA shape – intrinsic or induced?
Charles Vinson, NIH
Thursday Jun 7, 2018 12:22 - 12:47
Modified cytosine and DNA binding
Henry Pratt, UMass Medical School
Thursday Jun 7, 2018 15:03 - 15:23
The ENCODE Encyclopedia of candidate cis-regulatory elements and transcription factor binding sites
Jose Rodriguez-Martinez, University of Puerto Rico - Rio Piedras
Thursday Jun 7, 2018 15:29 - 15:55
Combinatorial recognition of DNA by bZIP transcription factors
Yaron Orenstein, Ben-Gurion University
Thursday Jun 7, 2018 16:32 - 17:04
Deep learning for protein-RNA interactions
Carlos Camacho, University of Pittsburgh -
Thursday Jun 7, 2018 17:10 - 17:47
Towards a zinc finger code for RNA recognition
